RnoEX0022987 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82756147-82756676:+
Coord C1 exon
chr10:82756147-82756254
Coord A exon
chr10:82756445-82756498
Coord C2 exon
chr10:82756623-82756676
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTCTCCCTCATAGGGT
3' ss Score
11.78
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGTGATGCTGGTCCCAAAGGTGCTGATGGTTCTCCTGGCAAAGATGGCGTCCGTGGTCTGACTGGTCCCATTGGTCCTCCTGGCCCTGCTGGTGCCCCTGGTGACAAG
Seq A exon
GGTGAAACTGGTCCCAGTGGTCCTGCTGGCCCCACCGGAGCCCGTGGTGCCCCC
Seq C2 exon
GGAGACCGTGGTGAGCCTGGTCCCCCTGGTCCTGCTGGCTTCGCTGGCCCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'64-43,'64-42,65-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(46.7=100),PF0139113=Collagen=PU(3.3=5.6)
A:
PF0139113=Collagen=PD(10.7=44.4),PF0139113=Collagen=FE(28.3=100)
C2:
PF0139113=Collagen=FE(28.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCAAAGGTGCTGATGGTT
R:
CGAAGCCAGCAGGACCAG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]