RnoEX0022995 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82757724-82758446:+
Coord C1 exon
chr10:82757724-82757831
Coord A exon
chr10:82758183-82758290
Coord C2 exon
chr10:82758393-82758446
Length
108 bp
Sequences
Splice sites
3' ss Seq
AGCCTTACTCTGTTCTTTAGGGT
3' ss Score
7.7
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGCTCTCCTGGTACCCCTGGACCTCAGGGTATTGCTGGACAGCGTGGTGTGGTCGGTCTTCCCGGTCAGAGAGGAGAAAGAGGCTTCCCTGGTCTTCCTGGACCCTCT
Seq A exon
GGTGAACCCGGCAAACAAGGTCCTTCTGGAGCAAGTGGTGAACGTGGTCCCCCTGGCCCTATGGGCCCCCCTGGATTGGCTGGCCCCCCTGGTGAATCTGGTCGTGAG
Seq C2 exon
GGATCCCCTGGTGCTGAAGGCTCCCCTGGAAGAGATGGTGCTCCTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'80-50,'80-49,81-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(28.9=72.2)
C2:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(9.8=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCTGGTACCCCTG
R:
CTTGGCACCAGGAGCACCAT
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]