RnoEX0022996 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82758183-82758672:+
Coord C1 exon
chr10:82758183-82758290
Coord A exon
chr10:82758412-82758446
Coord C2 exon
chr10:82758565-82758672
Length
35 bp
Sequences
Splice sites
3' ss Seq
GGGATCCCCTGGTGCTGAAGGCT
3' ss Score
0.07
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGAACCCGGCAAACAAGGTCCTTCTGGAGCAAGTGGTGAACGTGGTCCCCCTGGCCCTATGGGCCCCCCTGGATTGGCTGGCCCCCCTGGTGAATCTGGTCGTGAG
Seq A exon
GCTCCCCTGGAAGAGATGGTGCTCCTGGTGCCAAG
Seq C2 exon
GGTGACCGTGGTGAGACTGGCCCTGCTGGCCCCCCTGGTGCTCCTGGTGCTCCTGGTGCTCCCGGCCCTGTTGGTCCTGCTGGCAAGAATGGCGACCGTGGTGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'81-52,'81-51,82-52
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(28.9=72.2)
A:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(9.8=44.4)
C2:
PF0139113=Collagen=FE(38.9=100),PF0139113=Collagen=FE(42.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGAATCTGGTCGTGAG
R:
CATTCTTGCCAGCAGGACCAA
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]