MmuEX6088967 @ mm10
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94948332-94948813:+
Coord C1 exon
chr11:94948332-94948439
Coord A exon
chr11:94948562-94948596
Coord C2 exon
chr11:94948706-94948813
Length
35 bp
Sequences
Splice sites
3' ss Seq
GGGATCCCCTGGTGCTGAAGGCT
3' ss Score
0.07
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGAACCTGGCAAACAAGGTCCTTCTGGATCAAGTGGTGAACGCGGTCCCCCTGGCCCCATGGGGCCCCCTGGATTGGCTGGTCCCCCTGGTGAATCTGGACGTGAG
Seq A exon
GCTCCCCTGGAAGGGATGGTGCTCCCGGGGCCAAG
Seq C2 exon
GGTGACCGTGGTGAGACTGGCCCCGCTGGCCCCCCTGGTGCCCCTGGTGCTCCCGGTGCTCCCGGCCCTGTTGGTCCCGCTGGCAAGAATGGCGATCGTGGTGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'60-51,'60-50,61-51
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(20.0=77.8)
C2:
PF0139113=Collagen=FE(50.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTGAATCTGGACGTGAG
R:
TCACCACGATCGCCATTCTTG
Band lengths:
125-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types