DreEX0023122 @ danRer10
Exon Skipping
Gene
ENSDARG00000035809 | col1a1b
Description
collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
Coordinates
chr12:3071939-3075305:-
Coord C1 exon
chr12:3075198-3075305
Coord A exon
chr12:3075060-3075113
Coord C2 exon
chr12:3071939-3071992
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTATGCCTTCAAATCTGCAGGGT
3' ss Score
7.23
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAGAGCCAGGAAAGCAGGGACCCTCTGGGCCTGTTGGTGAACGTGGACCCCCTGGACCAATGGGACCCCCTGGACTGAGTGGAGCCCCTGGTGAGGCTGGACGTGAG
Seq A exon
GGTAACCCTGGACATGATGGTGTTTCTGGCCGCGATGGTCCTCCTGGACCAAAG
Seq C2 exon
GGTCCTGCTGGTCCTGCTGGTCCTTCTGGTCCTGCTGGTGCTCGTGGAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035809_MULTIEX1-27/31=26-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(19.2=77.8)
C2:
PF0139113=Collagen=FE(23.3=100),PF0139113=Collagen=PU(12.5=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAAGCAGGGACCCTCT
R:
GACCAGAAGGACCAGCAGGA
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]