BtaEX6087918 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37100893-37101358:+
Coord C1 exon
chr19:37100893-37101000
Coord A exon
chr19:37101105-37101158
Coord C2 exon
chr19:37101251-37101358
Length
54 bp
Sequences
Splice sites
3' ss Seq
CACCTCCCCGCCCCCCACAGGGA
3' ss Score
9.77
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGAACCCGGCAAACAAGGTCCTTCTGGAGCAAGTGGTGAACGTGGCCCCCCTGGTCCCATGGGCCCCCCTGGATTGGCTGGACCCCCTGGCGAGTCTGGACGTGAG
Seq A exon
GGAGCTCCTGGTGCTGAAGGATCCCCTGGACGAGATGGTTCTCCTGGCGCCAAG
Seq C2 exon
GGTGACCGTGGTGAGACCGGCCCTGCTGGACCTCCTGGTGCTCCTGGCGCTCCCGGTGCCCCCGGCCCTGTCGGACCTGCCGGCAAGAGCGGTGATCGTGGTGAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103-'44-43,'44-42,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAACAAGGTCCTTCTGGA
R:
CCAGGAGGTCCAGCAGGG
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]