RnoEX0022997 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82758393-82759067:+
Coord C1 exon
chr10:82758393-82758446
Coord A exon
chr10:82758565-82758583
Coord C2 exon
chr10:82759014-82759067
Length
19 bp
Sequences
Splice sites
3' ss Seq
CTTCTACTCTCTGTTCCCAGGGT
3' ss Score
10.6
5' ss Seq
CTGGCCCTG
5' ss Score
-13.81
Exon sequences
Seq C1 exon
GGATCCCCTGGTGCTGAAGGCTCCCCTGGAAGAGATGGTGCTCCTGGTGCCAAG
Seq A exon
GGTGACCGTGGTGAGACTG
Seq C2 exon
GGTCCTGCTGGTCCTGCTGGTCCCATTGGCCCTGCTGGTGCCCGTGGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'82-53,'82-52,83-53
Average complexity
S*
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100),PF0139113=Collagen=PU(9.8=44.4)
A:
PF0139113=Collagen=FE(38.9=100),PF0139113=Collagen=FE(42.7=100)
C2:
PF0139113=Collagen=PD(8.9=44.4),PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=PU(13.3=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCCTGGTGCTGAAGG
R:
CACCAGCAGGGCCAATGG
Band lengths:
94-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]