RnoEX0027131 @ rn6
Exon Skipping
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9976324-9976953:+
Coord C1 exon
chr9:9976324-9976424
Coord A exon
chr9:9976714-9976736
Coord C2 exon
chr9:9976852-9976953
Length
23 bp
Sequences
Splice sites
3' ss Seq
GCCCATGCCCTACCTCATAGGAG
3' ss Score
6.5
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTGACAGCCTGCGTTCACGCCTCCTGCGCTCTGCTCTACCCCATGCGCTGGGAGCATGTTTTGATCCCCACGCTGCCCCCGCACCTGCTGGATTACTGCTG
Seq A exon
GAGTCCACAGCAGTCTCGCTGAG
Seq C2 exon
AGAGTTCGGGAGAAAGCCCTGGAAGACGTTGTGGTGTTGAATGCAGACTCTAACACCCTGGAGACGCCCTTTGACGATGTGCAAGCTCTGCCGCCAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050-'15-21,'15-20,16-21
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.3=100)
A:
PF0214116=DENN=FE(7.4=100)
C2:
PF0214116=DENN=PD(8.4=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCTGCTGGATTACTGCTG
R:
AGCTTGCACATCGTCAAAGGG
Band lengths:
108-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]