DreEX6034118 @ danRer10
Exon Skipping
Gene
ENSDARG00000078503 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr1:55530608-55531569:-
Coord C1 exon
chr1:55531469-55531569
Coord A exon
chr1:55530793-55530838
Coord C2 exon
chr1:55530608-55530709
Length
46 bp
Sequences
Splice sites
3' ss Seq
TAATTTTCTCTCATTTTTAGTGC
3' ss Score
9.62
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGACGGCGTGTGTTCATGCATGTAACGGGATGCTCTTCCCAATGTACTGGCAACACATCTTTATTCCAGTGCTGCCACCTCACCTGCTGGACTACTGCTG
Seq A exon
TGCACCGATGCCGTACCTTATAGGAATTCACTCCAGTCTGGCAGAG
Seq C2 exon
AGGGTGAAGAGTCGCGCTCTGGAGGATGTGGTCATTTTAAACATCGACACCAACACCTTAGAGTCGCCTCATGAAGACCTGAAAAAGATACCGGCTGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078503-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.1=100)
A:
PF0214116=DENN=FE(8.2=100)
C2:
PF0214116=DENN=PD(9.3=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCCCAATGTACTGGCA
R:
GGCGACTCTAAGGTGTTGGTG
Band lengths:
137-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]