BtaEX6038702 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031809 | DENND1C
Description
DENN/MADD domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr7:19224488-19224948:+
Coord C1 exon
chr7:19224488-19224588
Coord A exon
chr7:19224695-19224740
Coord C2 exon
chr7:19224847-19224948
Length
46 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCGGTCGTCCACAGCGC
3' ss Score
8.93
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
CTGACCTCCTGTGTCCACGCGTCCTGCGCTCTCCTGTATCCCATGCACTGGGAGCACGTGCTGATCCCCACGCTGCCGCCGCATTTACTGGACTACTGCTG
Seq A exon
CGCGCCTATGCCCTACCTCATCGGAGTGCACGCCAGTCTCGCTGAG
Seq C2 exon
AGAGTGCGGGAGAAAGCCCTGGAGGACGTCGTGATTTTGAACGTCGACTCCAATACCTTGGAGACACCCTTCGACGATGTGCAGGCGCTGCCCCCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031809-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.3=100)
A:
PF0214116=DENN=FE(7.4=100)
C2:
PF0214116=DENN=PD(8.4=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTGTATCCCATGCAC
R:
TCGAAGGGTGTCTCCAAGGTA
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]