HsaEX0019126 @ hg38
Exon Skipping
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6475484-6476246:-
Coord C1 exon
chr19:6475837-6476246
Coord A exon
chr19:6475706-6475751
Coord C2 exon
chr19:6475484-6475585
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCCTCGGTCCGCAGCGC
3' ss Score
11.12
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGAGTCAGTGGAGGCTCAGTCCTTGCTCTACCTGCATGGGGAAGACTCAGGGGTGTTGCCTATTAACTGCGCCCCTTACAGAGAGGGATCAGGACGGTATGAGTCCTGGCTTCACCCGCTTAAAGCACTGTAAGTGGCCAAATTCCTGGTCTCCACATGATTTCTAAAGGGGTTCGAGTTGTCACTCATTATCCAGCAGTGGATGGGGAGGGGGAACAGGAGACTGGGGACGTGGGAAATGCAGCTGGAAGAGACCTCGCGCTAGAGGGTCCAGGCCCTGACTCCACGCCCCGCCATCGCTCCCCAGCTGACCTCGTGCGTCCACGCGTCCTGCGCGCTCCTGTACCCCATGCGCTGGGAGCACGTGCTGATCCCCACGCTGCCCCCACACCTGCTGGACTACTGCTG
Seq A exon
CGCGCCCATGCCCTACCTCATTGGAGTGCACGCCAGTCTCGCCGAG
Seq C2 exon
AGAGTACGAGAAAAAGCCCTGGAGGACGTCGTGGTGCTGAACGTGGACGCCAATACCTTGGAGACGACCTTTAACGACGTGCAGGCGCTGCCTCCAGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744-'21-39,'21-35,22-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.2=100)
A:
PF0214116=DENN=FE(7.4=100)
C2:
PF0214116=DENN=PD(8.3=50.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGCTGACCTCGTG
R:
GTCCTCCAGGGCTTTTTCTCG
Band lengths:
135-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development