MmuEX6078702 @ mm10
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57071788-57072436:-
Coord C1 exon
chr17:57072336-57072436
Coord A exon
chr17:57072009-57072054
Coord C2 exon
chr17:57071788-57071889
Length
46 bp
Sequences
Splice sites
3' ss Seq
AGTCTGTGTCCTCTCCACAGTGC
3' ss Score
9.54
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
CTGACAGCCTGTGTTCACGCATCCTGTGCCCTGCTCTACCCCATGCGCTGGGAGCACGTTCTGATCCCCACTCTACCCCCACACCTACTGGACTACTGCTG
Seq A exon
TGCGCCCATGCCCTACCTCATAGGAGTCCATGGCAGTCTCGCAGAG
Seq C2 exon
AGAGTCCGAGAAAAAGCGCTGGAAGATGTTGTGGTGTTGAATGCAGACTCTAACACCCTGGAGACACCCTTTGACGATGTGCAAGCTCTGCCGCCGGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(16.2=100)
A:
PF0214116=DENN=FE(7.4=100)
C2:
PF0214116=DENN=PD(8.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGAGCACGTTCTGATC
R:
GCACATCGTCAAAGGGTGTCT
Band lengths:
137-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types