RnoEX0042444 @ rn6
Exon Skipping
Gene
ENSRNOG00000021097 | Hpn
Description
hepsin [Source:RGD Symbol;Acc:61982]
Coordinates
chr1:89535214-89538434:-
Coord C1 exon
chr1:89538269-89538434
Coord A exon
chr1:89537986-89538002
Coord C2 exon
chr1:89535214-89535310
Length
17 bp
Sequences
Splice sites
3' ss Seq
GCCCTGGTCCACCTCTCTAGCTC
3' ss Score
6.84
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ACTGTGGCCGCAGGAAGCTGCCGGTGGATCGCATTGTGGGGGGCCAGGACAGCAGCCTGGGAAGATGGCCATGGCAGGTCAGCCTGCGTTATGATGGGACCCACCTCTGTGGGGGATCCCTGCTGTCCGGGGACTGGGTACTGACCGCTGCACACTGCTTTCCAGA
Seq A exon
CTCCCTGCCTCTCACAG
Seq C2 exon
AATACATCCAGCCGGTGTGTCTCCCTGCTGCGGGACAGGCCCTGGTGGACGGCAAGGTCTGTACAGTGACCGGCTGGGGTAACACACAGTTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021097-'11-14,'11-13,12-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=PD(6.5=12.5),PF0008921=Trypsin=PU(18.5=78.6)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(22.5=100),PF0008921=Trypsin=PU(1.9=3.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTATGATGGGACCCAC
R:
AGACACACCGGCTGGATGTAT
Band lengths:
105-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]