DreEX6042682 @ danRer10
Exon Skipping
Gene
ENSDARG00000027609 | HPN
Description
hepsin [Source:HGNC Symbol;Acc:HGNC:5155]
Coordinates
chr16:45294950-45300178:-
Coord C1 exon
chr16:45300013-45300178
Coord A exon
chr16:45297977-45298173
Coord C2 exon
chr16:45294950-45295045
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTCGGGCCTGTATTCTCAGGAG
3' ss Score
5.33
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTGTGGTCGTCGAATGCTGCCTGAGGAGCGGATAGTGGGGGGAGTGGATGCTCGACAGGGCTCGTGGCCATGGCAGGTCAGCTTACAGTATGATGGAGTTCATCAGTGTGGTGGATCCATCATTTCAGACCGCTGGATCATCAGTGCTGCACACTGCTTTCCTGA
Seq A exon
GAGGTATCGTCACGCATCCCGCTGGCGGGTTCTGATGGGCTCGATCTACAACACTCCCATCCGTAAGAATGTTGTGATCGCAGAGGTGAAGACGGTCGTCTACCACAGCAGTTACCTGCCCTTCGTCGACGCTAATATTGATGATAACAGTCGGGACATTGCAGTCATCTCATTGACGAAACCTCTGCAGTTCACTG
Seq C2 exon
ATTATATCCAGCCCGTGTGTCTTCCGACCTACGGCCAGCGTTTGGCAGACGGACAGATGGGTACAGTTACTGGCTGGGGTAACGTGGAGTATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027609-'10-11,'10-9,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=PD(6.5=12.5),PF0008921=Trypsin=PU(18.3=78.6)
A:
PF0008921=Trypsin=FE(27.5=100)
C2:
PF0008921=Trypsin=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGAATGCTGCCTGAGGAG
R:
CACGTTACCCCAGCCAGTAAC
Band lengths:
243-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]