BtaEX6081636 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003829 | HPN
Description
Bos taurus hepsin (HPN), mRNA. [Source:RefSeq mRNA;Acc:NM_001080241]
Coordinates
chr18:45986206-45990619:+
Coord C1 exon
chr18:45986206-45986371
Coord A exon
chr18:45986473-45986663
Coord C2 exon
chr18:45990524-45990619
Length
191 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCTTTCCCCGGTAGGCG
3' ss Score
10.42
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTGTGGCCACCGAAAACTGCCGGTCGATCGCATTGTGGGCGGCCAGGACACCAGCCTGGGCAGGTGGCCGTGGCAAGTCAGTCTTCGCTATGATGGAGCACATCTCTGTGGGGGGTCCGTGCTCTCTAGGGACTGGGTGCTGACAGCCGCCCACTGCTTCCCTGA
Seq A exon
GCGGAACCGGGTCCTATCACGATGGCGAGTGTTTGCTGGTGCTGTGGCCCAGACTTCACCCCATGGCGTGCAACTGGGGGTGCAGGCTGTCATCTACCATGGGGGCTATCTCCCCTTTCGAGACCCCAACAGCGAGGAGAATAGCAATGACATCGCCCTGGTCCACCTCTCCGGCACCCTGCCCCTCACAG
Seq C2 exon
AGTACATCCAGCCCGTGTGTCTCCCGGCTGCCGGGCAGGCCCTGGTGGATGGCAAGATCTGCACGGTGACTGGCTGGGGCAACACGCAGTACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003829-'17-19,'17-16,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF092725=Hepsin-SRCR=PD(6.4=12.5),PF0008921=Trypsin=PU(18.5=78.6)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAAACTGCCGGTCGATC
R:
GTAGTACTGCGTGTTGCCCC
Band lengths:
251-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]