RnoEX0045043 @ rn6
Exon Skipping
Gene
ENSRNOG00000001518 | Itga6
Description
integrin subunit alpha 6 [Source:RGD Symbol;Acc:621633]
Coordinates
chr3:58499981-58504075:+
Coord C1 exon
chr3:58499981-58500083
Coord A exon
chr3:58501265-58501438
Coord C2 exon
chr3:58503977-58504075
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTGTTTCCTGACAGGTG
3' ss Score
11.52
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGTCGCTAAGCCTTCGCAGGTGTATTTTGGAGGTACAGTTGTTGGTGAGCAGGCCATGAAGTCTGAAGATGAAGTAGGAAGTTTAATAGAGTATGAATTCAGG
Seq A exon
GTGATTAACTTGGGTAAACCTCTTAAAAACCTCGGCACGGCAACCCTGAATATCCAGTGGCCCAAGGAGATTAGCAATGGCAAATGGTTGCTTTATTTGATGAAGGTCGAATCCAAAGGTTTGGAGCAGGTTGTCTGTGAGCCACACAATGAAATAAACTTCCTCAAGCTGAAG
Seq C2 exon
GAGTCTCACAACTCAAGAAAGAAGCGGGAACTTCCTGAAAAACAGATAGACGACAGCAGGAAGTTTTCTCTATTTTCCGAAAGAAAATACCAGACCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001518-'30-29,'30-26,31-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.1=100)
A:
PF084417=Integrin_alpha2=FE(12.0=100)
C2:
PF084417=Integrin_alpha2=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCTAAGCCTTCGCAGG
R:
GAGGGTCTGGTATTTTCTTTCGGA
Band lengths:
202-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]