DreEX6034811 @ danRer10
Exon Skipping
Gene
ENSDARG00000042282 | itga6a
Description
integrin, alpha 6a [Source:ZFIN;Acc:ZDB-GENE-050309-23]
Coordinates
chr9:3503324-3505226:+
Coord C1 exon
chr9:3503324-3503426
Coord A exon
chr9:3503511-3503687
Coord C2 exon
chr9:3505128-3505226
Length
177 bp
Sequences
Splice sites
3' ss Seq
GATTTTTATCTTTTTCGCAGGTG
3' ss Score
9.9
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
GGTTGCCAAGCCCTCTCAGGTCTATTTTGGAGGTGAAGTCAAAGGCATGAGCGCTATGAAGAAGGAGGAGGAAGTCGGCAGCTTGATTGAATATGAATTCAGA
Seq A exon
GTGATTAATTTAGGAAAGCCTCTGAAGTCTTTTGGAACCGCTTCGCTAAACATCCAGTGGCCCAAAGAAAGTTCTGTGGGGAAATGGCTGCTGTATCTGATGAAGATCAACACCAGAGACCTGCAGTTGGTGACCTGTTCACCCGAGAGAGAGATTAACCCTCTAAAGCTTAGAGAG
Seq C2 exon
GATTCGTCAATCAGGAAAAAGCGGGAGCTGGAGGAGAGAAGACCGTCTGAGGGGAATAAAATATCCCTTTTCACTGACAAACGCAAACATAAGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042282-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.3=100)
A:
PF084417=Integrin_alpha2=FE(12.4=100)
C2:
PF084417=Integrin_alpha2=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCAAGCCCTCTCAG
R:
CAGGATCTTATGTTTGCGTTTGTCA
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]