BtaEX6009038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24147217-24150600:-
Coord C1 exon
chr2:24150498-24150600
Coord A exon
chr2:24148934-24149107
Coord C2 exon
chr2:24147217-24147315
Length
174 bp
Sequences
Splice sites
3' ss Seq
TACATATTATTTTCTAACAGGTA
3' ss Score
9.75
5' ss Seq
ACGGTATGT
5' ss Score
9.94
Exon sequences
Seq C1 exon
GGTTGCTAAACCTTCCCAGGTGTATTTTGGAGGTACAGTAGTTGGTGAGCAAGCGATGAAATCTGAAGAGGACGTGGGAAGTTTAATTGAGTACGAGTTCAGG
Seq A exon
GTAATTAACTTGGGCAAACCTCTTAAAAACCTCGGCACAGCAACCTTGAATATCCAGTGGCCAAAAGAAATTAGCAACGGCAAATGGTTGCTTTATTTGGTGAAAGTAGAATCAAAAGGATTGGAAAAAATAACTTGTGAGCCACAGGGTGAAATAAACTTCCTGAAACTAACG
Seq C2 exon
GAGGCTCACAACTCAAGAAGGAAACGAGAAATTGCCGAAAGACAGACAGATGATGGCAGAAAATTTTCTTTATTTTCTGAAAGAAAATATCAGACCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266-'26-22,'26-21,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.182
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.1=100)
A:
PF084417=Integrin_alpha2=FE(12.0=100)
C2:
PF084417=Integrin_alpha2=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGGTGTATTTTGGAGG
R:
AAGGGTCTGATATTTTCTTTCAGAAA
Band lengths:
192-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]