GgaEX1030698 @ galGal3
Exon Skipping
Gene
ENSGALG00000009362 | ITA6_CHICK
Description
NA
Coordinates
chr7:19096943-19098710:-
Coord C1 exon
chr7:19098608-19098710
Coord A exon
chr7:19097997-19098170
Coord C2 exon
chr7:19096943-19097041
Length
174 bp
Sequences
Splice sites
3' ss Seq
AAGAAAGTTTATTTTCACAGGTG
3' ss Score
4.07
5' ss Seq
GCGGTATGT
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGTGGCTAAGCCTTCTCAGGTATATTTTGGAGGTAACATCGTTGGTGAGAGTGCTATGAAATCTGAAGATAATATTGGAAACCTCATCGAGTACGAATTCAGA
Seq A exon
GTGACCAACTTGGGCAGGCCACTGAAAACATTTGGTACGGCTTCCCTGGACATCCAGTGGCCAAAAGAAATTAGTAATGGCAAATGGCTGCTGTATTTGATGAAAATAGAATCCAAGGGCTTGGAAAAAGTTTCCTGTCAACCACAGAATGAAATCAATGTTTTGCATGTTGCG
Seq C2 exon
GAATCCCATAATTCAAGAAGAAAGCGTGAGATTGCGGAGAAGCAGCTTACAGACAGCAAGACATTTTCTTTGTTTTCAGAAAGAAAATATAAGACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009362-'20-27,'20-26,21-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.121
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.1=100)
A:
PF084417=Integrin_alpha2=FE(11.9=100)
C2:
PF084417=Integrin_alpha2=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAAGCCTTCTCAGGTATATT
R:
TGAAAACAAAGAAAATGTCTTGCTGT
Band lengths:
178-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]