RnoEX0049484 @ rn6
Exon Skipping
Gene
ENSRNOG00000004132 | Lasp1
Description
LIM and SH3 protein 1 [Source:RGD Symbol;Acc:68408]
Coordinates
chr10:85744568-85761147:+
Coord C1 exon
chr10:85744568-85744816
Coord A exon
chr10:85752102-85752196
Coord C2 exon
chr10:85761063-85761147
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTCCGTCTGTCTCCACTCAGTTC
3' ss Score
9.37
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GCAGCCCCTCCTCCCCACTGTGTTTATTAGGGGAAGGAGGGCGGAGGCGGAGGCCAGTTCCCCAGTTCCAGTCGCCGTCGCCTGCACAGTTGCAGCCGCCGCCTCCTCCTACCAGCTCGCCCAAGGAAAAGGGAACGCGCGCGAGCACGGGCGTTCCCGCCCCAGTCTTTCCCCGGAACCATGAACCCTAACTGTGCCCGGTGCGGCAAAATCGTGTACCCCACGGAGAAGGTGAACTGTCTGGATAAG
Seq A exon
TTCTGGCATAAAGCATGCTTTCACTGCGAGACCTGCAAGATGACTTTGAACATGAAGAACTACAAGGGTTACGAGAAGAAGCCTTACTGCAATGC
Seq C2 exon
ACACTACCCCAAGCAGTCCTTCACCATGGTGGCCGACACTCCGGAGAACCTCCGCCTGAAGCAACAGAGCGAGCTGCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004132-'1-5,'1-2,15-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.552
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTCGCCCAAGGAAAA
R:
CATGGTGAAGGACTGCTTGGG
Band lengths:
168-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]