BtaEX6088262 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030587 | LASP1
Description
Bos taurus LIM and SH3 protein 1 (LASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035394]
Coordinates
chr19:40090995-40107566:+
Coord C1 exon
chr19:40090995-40091193
Coord A exon
chr19:40098034-40098128
Coord C2 exon
chr19:40107482-40107566
Length
95 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCCTCTGCCCCCAGTTC
3' ss Score
11.71
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AGTTCCCTAGCTCAAGCCGCCGTCGCTGTCGCCTGTGCAGTTGAGGCCGCGGCCGTCTCCCGCCAGCTCGTTCCGGGGAAAGAGAACGCGCGCGAGCTCGGGCGTCCTCGCCCCAGCCTTTCCCGGAGCCATGAATCCTAACTGCGCTCGGTGCTGCAAGATCGTGTATCCCACGGAGAAGGTGAACTGTCTGGATAAG
Seq A exon
TTCTGGCATAAAGCATGCTTCCACTGCGAGACCTGCAAGATGACCCTCAACATGAAGAACTACAAGGGCTACGAGAAGAAGCCCTACTGCAACGC
Seq C2 exon
ACACTACCCCAAGCAGTCCTTCACCATGGTGGCTGACACCCCGGAAAACCTCCGCCTCAAGCAACAGAGTGAGCTGCAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030587-'1-2,'1-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.517
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCCCGGAGCCATGAATC
R:
TGACTCTGCAGCTCACTCTGT
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]