DreEX0042639 @ danRer10
Exon Skipping
Gene
ENSDARG00000057867 | lasp1
Description
LIM and SH3 protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1936]
Coordinates
chr3:15937051-15960300:-
Coord C1 exon
chr3:15959858-15960300
Coord A exon
chr3:15955837-15955931
Coord C2 exon
chr3:15937051-15937135
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCCATGTCTCTCTTTTTCAGTAC
3' ss Score
10.85
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACTCCCAATATGAGTATCACAGTATCCGCTTGACGGTGTGATTTTTAAAACAAGTCAGCATTAAGTTTAACGCTTCCTAATACAAACTTTAACTAATTGAACTCAAAATCAGGACTTTTATCGATTTTAGATTGATATTAGATAGTGAAAGTCTTCCGCGGAATGCCCTTGCTTATCTGTGCACGTGAGCGCGCAGCAGGACACAGCGGCAGAGCCGTGAGCGCGCCTTCCGCGTCTGCTTCGTTTCGCTGACAGCCAGCGGTGCGAACTGGACTCATCAACGGCTACAGATCCACACCTCAACAACACAACACTGCTTCTGCCGACCGAGTCCTCGTTTCATCCCTTCGGCCTGCTGTTATTATTCCTCCAAAATGAACCCGCTGTGTAGCAGATGTAACCGAGTGGTGTATCCCACGGAAAAAGTGAATTGTCTTGACAAG
Seq A exon
TACTGGCATAAAGGATGCTTTAGCTGTGAAGTCTGTAAGATGACTCTAAACATGAAGAACTACAAAGGCTTTGAGAAGAGACCATACTGTAATGC
Seq C2 exon
ACACTATCCGAAGACATCTTTCACCAGTGTTGCGGACACTCCGGAGAACCTGCGTCTGAAACAACAAAGCAAGATGCAGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057867-'1-4,'1-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.425
Domain overlap (PFAM):
C1:
PF0041217=LIM=PU(31.6=78.3)
A:
PF0041217=LIM=FE(54.4=100)
C2:
PF0041217=LIM=PD(10.5=20.7),PF0088013=Nebulin=PU(55.2=55.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACAACACTGCTTCTGCC
R:
GTCCGCAACACTGGTGAAAGA
Band lengths:
177-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]