RnoEX0061650 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8896385-8898040:+
Coord C1 exon
chr3:8896385-8896554
Coord A exon
chr3:8897611-8897680
Coord C2 exon
chr3:8897973-8898040
Length
70 bp
Sequences
Splice sites
3' ss Seq
AACACGTGTTTTTATCCTAGACC
3' ss Score
7.15
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAATTCAGCCTTGGCGTGTGGAGTTGTCTCCATGTGGTGCTGGAGCTGATCGACTCCCAGCAGCAGGATCGATACTGGTGCCCACCTCTGCTGCACCGTGCAGCCATCGCCTTCCTTCACGCCCTGTGGCAGGACCGTAGGGACAGTGCCATGCTCGTCCTCAGAACCAA
Seq A exon
ACCCAGGTTTTGGGAGAATTTAACGAGTCCGCTGTTTGGAACTCTCTCTCCTCCTTCAGAGACATCTGAG
Seq C2 exon
CCCAGCATCCTGGAAACCTGTGCCCTCATCATGAAGATAATATGTTTGGAGATCTACTATGTAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(11.2=100)
A:
PF118943=DUF3414=FE(4.6=100)
C2:
PF118943=DUF3414=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGGTGCTGGAGCTGATC
R:
GATGAGGGCACAGGTTTCCAG
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]