BtaEX6046565 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99496655-99497858:+
Coord C1 exon
chr11:99496655-99496824
Coord A exon
chr11:99497331-99497400
Coord C2 exon
chr11:99497791-99497858
Length
70 bp
Sequences
Splice sites
3' ss Seq
GCCATGTATTTTCTTTTCAGACC
3' ss Score
9.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAATTCAGCCTCGGGGTGTGGAGCTGTCTCCACGCGGTGCTGGAGCTGATCGGTTCCCAGCAGCAGGACCGCTACTGGTGCCCCCCACTGCTGCACCGGGCAGCCATCGCCTTTTTGCACGCCCTGTGGCAGGACCGGCGGGACAGTGCCATGCTGGTCCTCAGAACCAA
Seq A exon
ACCCAAGTTTTGGGAGAATCTAACGAGTCCGCTATTTGGTACGCTTTCTCCTCCCTCGGAAACATCTGAG
Seq C2 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613-'34-38,'34-35,35-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(11.2=100)
A:
PF118943=DUF3414=FE(4.6=100)
C2:
PF118943=DUF3414=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGAGCTGATCGGTTC
R:
CATGATTAGGGCACAGGTTTCCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]