GgaEX1040858 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5419852-5421014:+
Coord C1 exon
chr17:5419852-5420021
Coord A exon
chr17:5420246-5420315
Coord C2 exon
chr17:5420947-5421014
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTATCTATCTTTTAGGCC
3' ss Score
10.89
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGTTCAGTCTGGGGGAGTGGAGTTGCCTCCAAGTAGTCTTAGAGCTGATAGACTCCAAACAACAGGAGAGGTACTGGTGTCCTCCCCTCCTGCACCGTGCTGCCATCGCCTTCCTGCACGCCTTGTGGCAGGACCGCCGAGATAGCGCCATGCTAGTTCTGAGGACAAA
Seq A exon
GCCAAAGTTTTGGGAAAATTTGACTAATCCACTCTTTGGGACTCTTCCTCCGCCTTCAGAGACGTCAGAG
Seq C2 exon
CTCAGTGTCTTGGATACCTGTGCCTTAATCATGAAAATCATCTGCTTGGAGATCTACTATGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548-'38-35,'38-33,39-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCAAGTAGTCTTAGAGCT
R:
GGCACAGGTATCCAAGACACTG
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]