HsaEX0044303 @ hg19
Exon Skipping
Gene
ENSG00000095319 | NUP188
Description
nucleoporin 188kDa [Source:HGNC Symbol;Acc:17859]
Coordinates
chr9:131755804-131757202:+
Coord C1 exon
chr9:131755804-131755973
Coord A exon
chr9:131756652-131756721
Coord C2 exon
chr9:131757135-131757202
Length
70 bp
Sequences
Splice sites
3' ss Seq
AACATTTATTTCCTTTTTAGACC
3' ss Score
9.09
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GAATTCAGCCTTGGGATGTGGAGCTGTCTCCATGCAGTGCTGGAGCTGATTGATTCCCAACAGCAAGATCGATACTGGTGCCCACCCCTGCTGCATCGTGCCGCCATTGCCTTTTTGCATGCTCTGTGGCAGGATCGGAGGGACAGTGCCATGCTGGTCCTCCGAACCAA
Seq A exon
ACCCAAGTTTTGGGAAAATTTAACCAGTCCGCTGTTTGGAACCCTTTCTCCTCCCTCTGAAACATCAGAG
Seq C2 exon
CCCAGCATCCTGGAAACCTGTGCCCTAATCATGAAGATAATTTGCTTGGAGATATACTATGTAGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095319-'34-39,'34-37,35-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(11.3=100)
A:
PF118943=DUF3414=FE(4.7=100)
C2:
PF118943=DUF3414=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTGCTGGAGCTGATTG
R:
TTAGGGCACAGGTTTCCAGGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)