GgaEX1040858 @ galGal3
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5975098-5976260:+
Coord C1 exon
chr17:5975098-5975267
Coord A exon
chr17:5975492-5975561
Coord C2 exon
chr17:5976193-5976260
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTATCTATCTTTTAGGCC
3' ss Score
10.89
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGTTCAGTCTGGGGGAGTGGAGTTGCCTCCAAGTAGTCTTAGAGCTGATAGACTCCAAACAACAGGAGAGGTACTGGTGTCCTCCCCTCCTGCACCGTGCTGCCATCGCCTTCCTGCACGCCTTGTGGCAGGACCGCCGAGATAGCGCCATGCTAGTTCTGAGGACAAA
Seq A exon
GCCAAAGTTTTGGGAAAATTTGACTAATCCACTCTTTGGGACTCTTCCTCCGCCTTCAGAGACGTCAGAG
Seq C2 exon
CTCAGTGTCTTGGATACCTGTGCCTTAATCATGAAAATCATCTGCTTGGAGATCTACTATGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCCAAGTAGTCTTAGAGCT
R:
GGCACAGGTATCCAAGACACTG
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]