DreEX6082861 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4414181-4419142:+
Coord C1 exon
chr21:4414181-4414350
Coord A exon
chr21:4417675-4417744
Coord C2 exon
chr21:4419075-4419142
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTTTATCCTTACAGAGA
3' ss Score
10.19
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GAGTTTTCTCTAGGCGAGTGGAGCTGTTTGTCGGTGGTGTTGGAGTTGTTGGACTCAAAGCAGCAGGGGAAGTACTGGTGTCCTCCACTCCTGCAGAGGGCAGCGCTGGCCTTCCTCCACGCACTCTGGCAGGACAGACGGGACAGTGCTCTCTCCGTGCTTAGGACCAA
Seq A exon
AGAAAAATTTTGGGAAAACCTCACAACTCCTTTATTTGGAAATTTACCTCCTCCATCAGAGACCACTGAG
Seq C2 exon
CCGTGTGTCCTGGAGTCTTGTGCATTTGTGATGAAGATTATCGCTCTTGAGATCTACTATGTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGCGAGTGGAGCTGTTTG
R:
CACAAGACTCCAGGACACACG
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]