RnoEX0062501 @ rn6
Exon Skipping
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80081555-80085276:-
Coord C1 exon
chr4:80085109-80085276
Coord A exon
chr4:80084550-80084668
Coord C2 exon
chr4:80081555-80081658
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTCATCCATGAACAGCGCAGCAG
3' ss Score
-4.25
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
GTAAAGTCAGAAGACGTCTTTGACGAGTGGGTGTCCAAGCTTCGTCACCACAGAATGTACCGGCAGAATGAGATCGCCATGTTTCCCCGGGATGTCAACCACTTTTTCCCAGGGTCCTCTGTCACAGACTCTGCTCCGGGAGTATTCGAGTCTGTTTCCAGTAGGAAG
Seq A exon
CAGTCTATCAAAGCAGAATTCATTTCCAGCTGGAAGCAATTTGTCATTTTCTTGTGGTGGGGACACACGAGTTCCATTCTGGCTACAGTCTTCAGAGGACATGGAAAAGTGCTCGAAAG
Seq C2 exon
ACTTGGCACACTGCCACACTTATCTGCTGGAGATGAGCCAGCTCTTAGAAAGCATGGACGTCTTGCATCGGACATACTCGGCGCCAGCTATCAACGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-'11-15,'11-14,12-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTGACGAGTGGGTGTCC
R:
CTGGATGGCGTTGATAGCTGG
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]