GgaEX6019261 @ galGal4
Exon Skipping
Gene
ENSGALG00000011007 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr2:31808150-31812938:-
Coord C1 exon
chr2:31812768-31812938
Coord A exon
chr2:31808999-31809125
Coord C2 exon
chr2:31808150-31808253
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTACTCTGTAACAGGCA
3' ss Score
8.01
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGAAATCTCAGGAGCTGTTTGATGAATGGGTAGCAAAGCTTCGTCATCACAGAATGTATCGTCAGAATGAAATCTCCATGTTTCCTCATGACGTCAATAATCTTTTCTTCCCAGTATCTACTACTGTGGACTCTGGCCCTGGTCTGTGTGATTTGACTCCAAGTAGAAAG
Seq A exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
Seq C2 exon
ATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'10-14,'10-12,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.021
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTGTTTGATGAATGGGT
R:
GTGCTGAACAGGTCCTGTGAA
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]