BtaEX0025475 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71420910-71423225:+
Coord C1 exon
chr4:71420910-71421077
Coord A exon
chr4:71421655-71421778
Coord C2 exon
chr4:71423122-71423225
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCATCTGTGGAACAGCGT
3' ss Score
4.93
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTGAAGTCAGAGGACGTCTTTGATGAGTGGGTATCCAAACTCCGCCACCACAGAATGTACCGTCAGAATGAAATCGCCATGTTTCCACACGAAGTTAATCATTTTTTCCCAGGATCTACAGTCCCAGACTCCGGTCCTGGAGTCATGGACACCATTTCAAGTAGGAAG
Seq A exon
CGTAGCAGTATATCAAAGCAGAATTCGTTTCAAACCGGAAGCAATTTATCATTTTCTTGTGGTGGTGAGACTCGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
Seq C2 exon
ACCTGGCACACTGTCATGCCTACCTGGTGGAGATGAGCCAGCTTCTGCAAAATATGGACATCCTGCATCGGACATATTCGGCACCAGCTATCAATGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342-'7-14,'7-9,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGTATCCAAACTCCGC
R:
ATGGCATTGATAGCTGGTGCC
Band lengths:
244-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development