HsaEX6007525 @ hg38
Exon Skipping
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24863496-24866237:-
Coord C1 exon
chr7:24866070-24866237
Coord A exon
chr7:24865342-24865465
Coord C2 exon
chr7:24863496-24863599
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTGTCATCCGTGGAACAGCGT
3' ss Score
4.9
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTCAAGTCAGAAGAAGTCTTTGATGAGTGGGTATCGAAACTTCGCCACCACAGAATGTATCGTCAGAATGAAATTGCCATGTTTCCACATGAAGTTAACCACTTTTTCTCAGGGTCCACCATCACAGACTCTTCATCTGGGGTGTTTGACTCCATTTCAAGTAGGAAG
Seq A exon
CGTAGCAGTATATCAAAGCAGAATTTATTTCAAACTGGAAGCAATGTATCATTTTCTTGTGGTGGTGAGACACGAGTTCCATTATGGTTACAGTCTTCAGAGGACATGGAAAAATGCTCCAAAG
Seq C2 exon
ACCTGGCGCACTGTCATGCCTACCTGGTAGAAATGAGCCAGCTCCTGCAAAGCATGGACGTCCTGCATCGGACATACTCGGCACCAGCTATCAACGCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882_MULTIEX1-2/21=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTTGATGAGTGGGTATCGA
R:
CTGGATGGCGTTGATAGCTGG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains