GgaEX6019261 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31605023-31609811:-
Coord C1 exon
chr2:31609641-31609811
Coord A exon
chr2:31605872-31605998
Coord C2 exon
chr2:31605023-31605129
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTACTCTGTAACAGGCA
3' ss Score
8.01
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGAAATCTCAGGAGCTGTTTGATGAATGGGTAGCAAAGCTTCGTCATCACAGAATGTATCGTCAGAATGAAATCTCCATGTTTCCTCATGACGTCAATAATCTTTTCTTCCCAGTATCTACTACTGTGGACTCTGGCCCTGGTCTGTGTGATTTGACTCCAAGTAGAAAG
Seq A exon
GCAGGAAGCTTGACCAAACAGAACTCTCTGTCAGCTGGTGGTAACTTGTCGTTTTCCTTTTCGAGTAATGAGTCCAGGATTCCATCTTGGCTACAGTCCTCTGAAGACATGGAAAAATGCTCAAGAG
Seq C2 exon
CAGATCTCTCCACTTGTCATGCATATTTACTGGAAATGAACCAGCTGTTACAGAGCATGGATGTTCTTCACAGGACCTGTTCAGCACCTGCTATAAATGCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'5-11,'5-10,7-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.011
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=29.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTGTTTGATGAATGGGT
R:
GTGCTGAACAGGTCCTGTGAA
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]