DreEX6040574 @ danRer10
Exon Skipping
Gene
ENSDARG00000040482 | osbpl3b
Description
oxysterol binding protein-like 3b [Source:ZFIN;Acc:ZDB-GENE-090109-1]
Coordinates
chr16:21528552-21535539:+
Coord C1 exon
chr16:21528552-21528716
Coord A exon
chr16:21535229-21535340
Coord C2 exon
chr16:21535436-21535539
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTCTCTGTAAATAGCGT
3' ss Score
7.79
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
ATTAAATCCCAGGAGCTCTTTGATGAATGGGTCTCTAAGCTTCGTCACCACAGACTTTACAGGCAGAATGAGATCGCCATGTTCCCTCATGAGAAAGCGCTCTTCCACCCTCATTACCCCCTCACCTCCTCTCCCACGATACCTGACAGTCAGGCCATCAGAAAG
Seq A exon
CGTGCCTCTCTTGCAAAGCAGTCTTCTCTCCACTCACCTGCACCATTTACCAGCCAGGCCAAGGTGACCGCCTGGCTCCAGTCTTCAGACGACATGGACAGGTGCACCAAAG
Seq C2 exon
AACTGTCTGTATGCGAGGCTCAGTTGCTGGAACTGAATCACTTGTTAAGAAGTATGGAGGTGTTACACCGCACATACTCTGCCCCAGCAATCAACGCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040482-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF154091=PH_8=PD(18.9=30.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGGAGCTCTTTGATGAA
R:
GGCAGAGTATGTGCGGTGTAA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]