MmuEX0033222 @ mm10
Exon Skipping
Gene
ENSMUSG00000029822 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:MGI Symbol;Acc:MGI:1918970]
Coordinates
chr6:50344874-50351957:-
Coord C1 exon
chr6:50351844-50351957
Coord A exon
chr6:50347366-50347489
Coord C2 exon
chr6:50344874-50345030
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCATCCGTGAACAGCGT
3' ss Score
7.12
5' ss Seq
AAGGTAGCA
5' ss Score
6.28
Exon sequences
Seq C1 exon
ATTGAGCGGGAGAAGTTGCATGGCTGCATTGACGTGGGGCTCTCTGTGATGTCTGTGAAGAAGTCGTCTAAGTGTATCGACCTAGACACGGAGGAGCACATCTACCACCTGAAG
Seq A exon
CGTAGCAGTCTATCAAAGCAGAATTCATTTCCACCCGGAAGCAATTTGTCATTTTCTTGTGGTGGCGACACTCGAGTTCCTTTCTGGCTACAGTCTTCAGAGGACATGGAAAAATGTTCAAAAG
Seq C2 exon
GTCCCTAAGCCTTTTTCTGGCCCTGTGAGACTGCACTCCTCCAATCCTAACTTGTCGACGCTGGACTTTGGAGAAGAGAAGTCTTACTCGGATGGTTCTGAAGCCTCGTCGGAGTTCTCCAAGATGCAGGAGGATCTGTGCCATGTCGCCCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029822_MULTIEX1-2/4=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.095 C2=0.321
Domain overlap (PFAM):
C1:
PF154091=PH_8=FE(41.1=100)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGCGGGAGAAGTTGCATG
R:
GCACAGATCCTCCTGCATCTT
Band lengths:
254-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types