RnoEX0067710 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2070090-2076039:+
Coord C1 exon
chr12:2070090-2070117
Coord A exon
chr12:2070488-2070575
Coord C2 exon
chr12:2075880-2076039
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCGTTCGTTCCGCAGGTG
3' ss Score
13.52
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GACTGCAGGCTACCAGACCTGCTCCCTA
Seq A exon
GTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCACCGCCGTACTCATCCTCTTGGTGGTGCGAAGGCTACGGGTGCAAA
Seq C2 exon
GGTGCTGGGTCACTTTGAGAAGCCACTCTTCCTGGAGCTCTGCCGGCACATGGTTTTCCAGCGTCTTGGGCAGGGGGACTACGTTTTTCGGCCTGGTCAGCCAGATGCCAGCATCTACGTGGTTCAGGATGGGCTGCTGGAGCTCTGTCTACCGGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_MULTIEX1-1/31=C1-5
Average complexity
C3
Mappability confidence:
99%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002724=cNMP_binding=PU(34.7=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAGGCTACCAGACCT
R:
CGGTAGACAGAGCTCCAGCAG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]