DreEX6032888 @ danRer10
Exon Skipping
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45214329-45216974:-
Coord C1 exon
chr1:45216918-45216974
Coord A exon
chr1:45214588-45214675
Coord C2 exon
chr1:45214329-45214503
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCAAATCCACAGGTG
3' ss Score
10.83
5' ss Seq
GCAGTTAGT
5' ss Score
0.14
Exon sequences
Seq C1 exon
ACGGACAGATTTGGAAACATCAAGAGTTTAGTGGAGGATCAGCTGCAGACCAGCATG
Seq A exon
GTGGTGGGGATTGTAATCGGCGCTGGAGTCGTCATCGTTCTCATCGCCGTCCTCATATTTTTTGTCTTGCGCCGGATGCAGCTCCGCA
Seq C2 exon
AACTGGAGGCTCAGGAAGTCCCAAAGTATCGATTTCGTAAAAGAGACAAAGTGTTGTTTTATGGGAGGAAGATCATGAGGAAAGTATCTCAATCCACCTCTTCCTTGGTGGGTGCCACTTCCTCCACCAGACCCCGTCTCAAAAAGAAGCAGAAGATGCTGAACATTGCCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0129912=Lamp=FE(32.1=100),PF063056=DUF1049=PU(18.0=47.4)
A:
PF0129912=Lamp=FE(51.8=100),PF063056=DUF1049=FE(58.0=100)
C2:
PF0129912=Lamp=PD(3.6=3.4),PF063056=DUF1049=PD(20.0=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGAGGATCAGCTGCAGA
R:
TTTTTGAGACGGGGTCTGGTG
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]