BtaEX0027733 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17624452-17625158:+
Coord C1 exon
chr7:17624452-17624478
Coord A exon
chr7:17624815-17624902
Coord C2 exon
chr7:17625076-17625158
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCGTTCGTCCCGCAGGTG
3' ss Score
13.83
5' ss Seq
CGAGTGAGG
5' ss Score
4.44
Exon sequences
Seq C1 exon
ATGGACGCCCCGCTGCAAACCGGAATG
Seq A exon
GTGCTGGGCATGATGATCGGGGCTGGAGTCGCGGTTCTGGTCACGGCCGTGCTCATCCTGCTGCTGGTGCGGAGGCTTCGAGTGCCGA
Seq C2 exon
AAGCTCCAGCCCCGGACGGCCCCCGTTACCGATTCCGGAAGAGAGACAAAGTGCTTTTCTATGGCCGGAAGATCATGCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-'5-5,'5-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development