MmuEX0036054 @ mm10
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3516681-3517407:+
Coord C1 exon
chr8:3516681-3516749
Coord A exon
chr8:3517077-3517164
Coord C2 exon
chr8:3517325-3517407
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCGTTCGTTCCGCAGGTG
3' ss Score
13.52
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
GACTGCAGGCTACAAGACCTGCTACCTAGTCCGAAACAATCGATGGAGGCCCCACTGCAAACCGGAATG
Seq A exon
GTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCACCGCCGTGCTCATCCTCTTGGTGGTGCGAAGGCTGCGGGTGCAGA
Seq C2 exon
AAACTCCAGCCCCGGAGGGTCCCCGGTATCGGTTCCGGAAGCGGGACAAAGTGCTTTTCTATGGCCGGAAGATTATGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'6-9,'6-7,11-9
Average complexity
S
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.022 C2=0.188
Domain overlap (PFAM):
C1:
PF094725=MtrF=PU(33.3=52.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAGGCTACAAGACCTG
R:
CTTCCGCATAATCTTCCGGCC
Band lengths:
152-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types