RnoEX0076797 @ rn6
Exon Skipping
Gene
ENSRNOG00000053405 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:RGD Symbol;Acc:1303036]
Coordinates
chr7:139167303-139170908:-
Coord C1 exon
chr7:139170811-139170908
Coord A exon
chr7:139170343-139170441
Coord C2 exon
chr7:139167303-139167587
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTATATTTGGACTGTTTCAGGAG
3' ss Score
7.47
5' ss Seq
AGAGCGTAA
5' ss Score
-22
Exon sequences
Seq C1 exon
AAAATTGAACCATCTTTGTATCCGAAGTTGTTTCAGAAAAACCTAGATCCAGATGTATTCAATCAAATCATTAAAATTTTACACGACTTTTACGTTGA
Seq A exon
GAGGGAAAAGCCAGCTCTCATCTTTGAAGTCTTAGAAAGGCTTTCTCAGCTAAGAAGGTTCGACATGGCGGTGATGTTTATGTCAGGAACTGAGAGAGA
Seq C2 exon
TCACAAAAGTATTATTCAATCACTTAGAAAAATCAGAATTGAAGGAGGATTCTGTTGAAGAACTCAAGAAAAGATACGGCGGTGGCTGACCTCCATGATTGGACATTGTTACCTCTTCTGTGTATGTTACTTTTCTTACTGAAATCAAGTGTTTGGCCCTTTAGACAGTGAAACCTTACCTGAGAGGACTTTCCTCTCTGGACGGCAGTTGACTCACTGTAAATGTTCTGTGGCCTAACTCGTGAGAAATGCTTCAAAAATAAACTAAGTTTCCATGAGATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053405-'28-32,'28-31,29-32
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTTTGTATCCGAAGTTGT
R:
GCCACCGCCGTATCTTTTCTT
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]