DreEX0062941 @ danRer10
Exon Skipping
Gene
ENSDARG00000087962 | rpap3
Description
RNA polymerase II associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-928]
Coordinates
chr4:966051-969794:+
Coord C1 exon
chr4:966051-966148
Coord A exon
chr4:967698-967798
Coord C2 exon
chr4:969408-969794
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTTTTATAATTCAGACC
3' ss Score
6.26
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
CAAATCAGTCCAGACTCGTATCCAAAGATCTTCCAGAACTCTCTGGAGTCCGACGTGCTGAACCGCATCCTGCAGACCTTCCACCGCTGCCACACACG
Seq A exon
ACCTGAGGAAGCGTCTCTTCTGCTGGACGTCCTGAGAAACCTGGCGAGCGTGAAGAGATTCGACATGGCCGTCATGTTTATGTCAAACACGGAGAAGAAAA
Seq C2 exon
TGGTGCAGGAGCTGTTTGAACGGATTCACAATGCCGGTCTGACAGACTCCACAGTTCAAGACTTACAGAAGAAATACGGCCTCTGACCTGCACAGTATAACAAGACTAAAAGCTTCATCTCAAACTGTGAATGAACAAAAACACCAGTGGATGCGCTGTGCCTTCTGACACGTCTGTTTGACTCCTGTGTGTGTTTGCTTAGTGATGTTATTGTGAGTCCATCTCAAATGTGTGTTGCTTCAGTTCACCGTTGGTCATGTGACTGTTTATCGCTTGTCTAGTTGCACGTTCCTCATCTGAATCTGCTTACATTAAATTCAACATTAAAAAAACATCCAAACGCACTCTCTTCACTTGTACACCGAATAAATTAAACTGAGTATAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087962-'19-19,'19-18,21-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTCCGACGTGCTGAA
R:
AGCAAACACACACAGGAGTCA
Band lengths:
255-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]