GgaEX1049926 @ galGal4
Exon Skipping
Gene
ENSGALG00000009743 | RPAP3
Description
RNA polymerase II-associated protein 3 [Source:RefSeq peptide;Acc:NP_001006231]
Coordinates
chr1:31369388-31371974:-
Coord C1 exon
chr1:31371877-31371974
Coord A exon
chr1:31370986-31371086
Coord C2 exon
chr1:31369388-31369890
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTCTAATAATCTTCTCCAGGAA
3' ss Score
9.03
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAAATAGAGCCTTCGATTTATCCAAAACTGTTCCAGAAATCCTTAGATCCAGACTTATTTAACCAGATACTGAGAATTCTACATGACTTCTACATTGA
Seq A exon
GAAAGAGGAGCCATCACTCATCCTTGAAATCCTCCAAAGGCTATCTGAATTAAAAAGATTTGATATGGCAGTAATGTTTATGTCAGGATCAGAGAAGAAAA
Seq C2 exon
TTACACAGGTACTATTCAGTCATATGAAAGACATGGGATTGAAAGATACTTCTGTTGAACAACTAGAGAAGAAATACGCTGTATTCTCTTAGTGAGTTTCCTGACACTACGTATGTAAATTGCTCTGTTTCCACGCTTCCGTCATGTTGAACTCAGCAGAAGAATCCTATAAAGACTGGAGTTCAGTTGCTTTTGTATATGTGATTAGATTCTTAAAAGTTGATTCATCCAAATGGCCAGTGCCTGGAGAGGGAATTTCTTAGTTCTGCAGGCACATCTACTTTCCAGCACCTGAAACAATACAGATTTATGTATCTTCAGCGGAATCTGTTTGCCTAAAAAACAATGAATGGTGTTCCAGATTGCAACTGCAGATGGAGGTCTTTATTGAAAAGAAAAAAATATATATATTTATGAACATTCATTTGGTAAGAATCAAATGATGTGTAAGAAATTTGCTTTTTGTATTTCAGAAAGTAAAATAAATGTTGAGTTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009743_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCGATTTATCCAAAACTGT
R:
AGTTCAACATGACGGAAGCGT
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]