HsaEX6066138 @ hg38
Exon Skipping
Gene
ENSG00000005175 | RPAP3
Description
RNA polymerase II associated protein 3 [Source:HGNC Symbol;Acc:HGNC:26151]
Coordinates
chr12:47661249-47667851:-
Coord C1 exon
chr12:47667754-47667851
Coord A exon
chr12:47666980-47667080
Coord C2 exon
chr12:47661249-47663590
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTATATTTGGATTATTTCAGGAA
3' ss Score
6.94
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CAAATTGAACCATCTTTGTATCCTAAGTTGTTTCAGAAAAATCTGGATCCAGATGTATTCAACCAGATCGTTAAAATTCTGCATGACTTTTACATTGA
Seq A exon
GAAAGAAAAGCCATTACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAAAAGGTTTGATATGGCAGTGATGTTTATGTCAGAAACAGAGAAAAAGA
Seq C2 exon
TTGCACGTGCATTATTTAATCACATAGACAAGTCAGGATTGAAGGATAGTTCTGTCGAAGAACTCAAGAAAAGATACGGTGGTTGATTTCCATTTTTGCTGAAATAATTGTTTTTGACTTTCATATGTAAATTTTTTCTACTGAAAGTGTTTTGCTTTTTAAGAAAATGAAATTATATAGCAGGAAAGGACTATCTTTGAACATAAGTTAATTAACTATAAGGTGAATTGTGATTTAACTAGTGAGAATTGTATTCAAGTGAACTCTGTTTTTCTGAAAATAAAAATATAAACAATGAGATACATTTGTAAGGATCAGCATTTTATTTTATGAGTCATTTTAAATGTTAAATTTAGATACATTCTTCAGTGACCCATAAATGTAACATTATTTTTATATTTTCATGAGTTTTTGTAACCACTTGCCAAAGCTGCTTCATTAGCATATGAATAATTACCTTTGTAAAGAGGAAGTTAAATAGATAGTGAGATCCTTTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005175-'28-40,'28-38,29-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGTATTCAACCAGATCGT
R:
TGTTCAAAGATAGTCCTTTCCTGCT
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains