MmuEX1022744 @ mm10
Exon Skipping
Gene
ENSMUSG00000022466 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:MGI Symbol;Acc:MGI:1277218]
Coordinates
chr15:97675252-97679167:-
Coord C1 exon
chr15:97679070-97679167
Coord A exon
chr15:97678386-97678486
Coord C2 exon
chr15:97675252-97675352
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTGGACTGTTTCAGGAG
3' ss Score
7.54
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
Exon sequences
Seq C1 exon
AATATCGAACCATCTTTGTATCCGAAGTTGTTTCAGAAAAACCTAGATCCAGATGTATTCAATCAAATCATTAAGATTCTACACGACTTTTACATTGA
Seq A exon
GAGGGAAAAGCCAGCTCTCATCTTTGAAGTCTTAGAACGACTTTCTCAGCTGAGAAGGTTTGACATGGCGGTGATGTTTATGTCAGGACCTGAGAGAAAGC
Seq C2 exon
AAAAATCAGACCTGAAGGAAGATTCTGTTGAAGAACTCAAGAAAAGATACGGCGGCTGACCTCCATGATCGGACGTTGCCGCCTCTGTGTACATTATTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022466-'28-28,'28-26,29-28
Average complexity
S
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGAACCATCTTTGTATCCGAAGT
R:
AAATAATGTACACAGAGGCGGCA
Band lengths:
194-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types