HsaEX6066138 @ hg19
Exon Skipping
Gene
ENSG00000005175 | RPAP3
Description
RNA polymerase II associated protein 3 [Source:HGNC Symbol;Acc:26151]
Coordinates
chr12:48057075-48061634:-
Coord C1 exon
chr12:48061537-48061634
Coord A exon
chr12:48060763-48060863
Coord C2 exon
chr12:48057075-48057373
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTATATTTGGATTATTTCAGGAA
3' ss Score
6.94
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CAAATTGAACCATCTTTGTATCCTAAGTTGTTTCAGAAAAATCTGGATCCAGATGTATTCAACCAGATCGTTAAAATTCTGCATGACTTTTACATTGA
Seq A exon
GAAAGAAAAGCCATTACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAAAAGGTTTGATATGGCAGTGATGTTTATGTCAGAAACAGAGAAAAAGA
Seq C2 exon
TTGCACGTGCATTATTTAATCACATAGACAAGTCAGGATTGAAGGATAGTTCTGTCGAAGAACTCAAGAAAAGATACGGTGGTTGATTTCCATTTTTGCTGAAATAATTGTTTTTGACTTTCATATGTAAATTTTTTCTACTGAAAGTGTTTTGCTTTTTAAGAAAATGAAATTATATAGCAGGAAAGGACTATCTTTGAACATAAGTTAATTAACTATAAGGTGAATTGTGATTTAACTAGTGAGAATTGTATTCAAGTGAACTCTGTTTTTCTGAAAATAAAAATATAAACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005175-'14-17,'14-15,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGTATTCAACCAGATCGT
R:
TGTTCAAAGATAGTCCTTTCCTGCT
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)