BtaEX6021168 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018690 | RPAP3
Description
Bos taurus RNA polymerase II associated protein 3 (RPAP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101930]
Coordinates
chr5:32793813-32797296:+
Coord C1 exon
chr5:32793813-32793910
Coord A exon
chr5:32794374-32794474
Coord C2 exon
chr5:32796993-32797296
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTATTTGGACTTCAGGAA
3' ss Score
6.04
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CAAATTGAACCATCCTTGTATCCCAAGTTGTTTCAGAAAAATCTAGATCCAGATGTATTCAACCAAATCATTAAAATTCTGCATGACTTTTACATTGA
Seq A exon
GAAAGAAAAGCCATCACTCATCTTTGAAATCTTACAAAGACTTTCTGAACTAAGAAGGTTTGATATGGCAGTGATGTTTATGTCAGAATCTGAGAAGAAAA
Seq C2 exon
TTACACGTGTATTATTCAATCACATAGACAAATCAGGATTGAATGATAACTCTGTTGAAGAACTCAAGAAAAGATATGGTGGTTGATTTCCATTTTTGCTGAAATTATTGCCTCTTTAAATTTCATATGTAAATTTTTTTCTACTGAAATTAAATGTTTTGCTTTTTAAGAAAATTAAATCATACAGAAAAAGGACTGTTTCTGGACATAAGCTAATTAAGTGTAAAGTGAATTGTGATTAGTGAGAAATATACTTAAGTGAACTATTTATAAGTTTTTTCTGAAAATAAAAATATAAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018690-'20-22,'20-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138771=RPAP3_C=FE(33.7=100)
A:
PF138771=RPAP3_C=PD(34.7=94.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAATCATTAAAATTCTGCATGAC
R:
AGCTTATGTCCAGAAACAGTCCT
Band lengths:
251-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]