RnoEX0078294 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62358645-62360837:+
Coord C1 exon
chr8:62358645-62358762
Coord A exon
chr8:62359972-62360100
Coord C2 exon
chr8:62360678-62360837
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCAACCCCTTTTTTACACAGTAA
3' ss Score
5.06
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTGTTGCGGCTGCAGCCCAGGCAGGCCTGCTTCGGCAGCAGGAAGAGTTAGACAGGAAAGCTGCTGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCGGCGAATTTGCATG
Seq A exon
TAAGAGAAAACAACTGGCCGCCACTCCCCTCATGGTGCCCTGTGAAACCCTGCTTCTATCAGGACTTCTCCACGGAGATCCCTGCCGACTACCAGCGGATATGCAAGATGCTTTACTATCTGTGGATGT
Seq C2 exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCATGCCTGGCCTGGTTCACAAGTGACGCAGCTAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATTTTCACGCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136-'10-11,'10-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120723=DUF3552=FE(84.8=100)
A:
PF120723=DUF3552=PD(10.9=11.4),PF041448=SCAMP=PU(42.4=95.5)
C2:
PF041448=SCAMP=FE(29.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGCAGCAGGAAGAGTTAGA
R:
AAGCCTTGTAGATGGGTCGGT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]