GgaEX6007313 @ galGal3
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
NA
Coordinates
chr10:1817474-1818967:+
Coord C1 exon
chr10:1817474-1817591
Coord A exon
chr10:1818162-1818290
Coord C2 exon
chr10:1818808-1818967
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTGTCCCTTCCACAGCGA
3' ss Score
10.37
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
GCTGTGGCTGCAGCAGCACAGGCCGGGCTGCTTCAGCAGCAGGCAGAACTAGAGAGGAAAGCAGCTGAGCTGGAGAAGAAGGAAAGGGAATTGCAGAACAATGCAGCCAGCATTAATC
Seq A exon
CGAGACAGAACAACTGGCCACCCCTCCCCAGGAAGTGTCCGATCAAGCCGTGCTTCTATCAGGACTTTTCTGCAGACATCCCAGCTGACTACCAGCGGATATGCAAGATGCTTTACTACTTGTGGATGC
Seq C2 exon
TGCATTCAGTTACTCTGCTCCTAAACCTGCTCGCTTGCTTGGCATGGTTCATGGTTCACGCAGAAAAAGGAGTAGACTTCGGTCTCTCAATCCTGTGGTTTGTTTTATTCACTCCTTGTGCCTTTCTCTGCTGGTACCGACCGATCTACAAGGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=FE(40.6=100),PF120723=DUF3552=PU(84.8=97.5)
A:
PF117403=KfrA_N=PD(3.1=6.8),PF120723=DUF3552=PD(13.0=13.6),PF041448=SCAMP=PU(30.4=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGGCAGAACTAGAGAG
R:
TGAAAGCCTTGTAGATCGGTCG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]