MmuEX6066210 @ mm9
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57427240-57429456:+
Coord C1 exon
chr9:57427240-57427357
Coord A exon
chr9:57428591-57428719
Coord C2 exon
chr9:57429297-57429456
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGAACCCTTTTTTACACAGTGC
3' ss Score
6.6
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTGTTGCAGCTGCGGCCCAGGCAGGCTTGCTTCGACAGCAGGAAGAACTAGACAGGAAAGCTGCCGAGCTGGAACGCAAGGAGCGAGAGTTGCAGAACACTGCAGCGAATTTGCATG
Seq A exon
TGCGAGACAACAACTGGCCGCCACTCCCCTCATGGTGCCCTGTGAAACCCTGCTTCTATCAGGACTTCTCCACGGAGATCCCTGCTGACTACCAGCGGATTTGCAAGATGCTTTACTATCTCTGGATGT
Seq C2 exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCGTGCCTGGCCTGGTTCACAAGTGACGCAGCCAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATCTTCACTCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120723=DUF3552=PU(86.7=97.5)
A:
PF120723=DUF3552=PD(11.1=11.4),PF041448=SCAMP=PU(23.5=95.5)
C2:
PF041448=SCAMP=FE(29.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACAGCAGGAAGAACTAGACA
R:
AAGCCTTGTAGATGGGTCGGT
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: