DreEX0064339 @ danRer10
Exon Skipping
Gene
ENSDARG00000017010 | scamp2l
Description
secretory carrier membrane protein 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-6432]
Coordinates
chr7:56794887-56797932:+
Coord C1 exon
chr7:56794887-56795001
Coord A exon
chr7:56795087-56795215
Coord C2 exon
chr7:56797773-56797932
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCGAGACTCTATGCTTGTAGGTA
3' ss Score
3.76
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCAAGTGTAGCCTCAGGACAGGCTGAGCTCCTCCGTCAGCAAGCGGAGCTGGAGAGAAAAGCAGCAGAGCTGGAGCGAAAAGAGCAGGAGCTTCGAGATCGTGATGCTGCACGAG
Seq A exon
GTAAAGAAAACAACTGGCCGCCGTTGCCCAAGTTCTTGCCAATCAAACCTTGCTTTTATCAGGATTTTAATGAAGAAATTCCTGTGGAATATCAGAGGGTTTGCAAGATGATGTACTACCTCTGGATGT
Seq C2 exon
ATCACAGTGTGACACTGTTCCTGAATCTGCTGGCCTGCTTGGTGTATTTCACTGTATCTACTCAGAATGGAGTTGACTTTGGACTCTCAATCCTGTGGTTTATTTTGTTCACTCCTGTTGCTTTCGTCTGCTGGTACCGACCCGTATACAAGGCCTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017010-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=PU(23.6=95.5)
C2:
PF041448=SCAMP=FE(29.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGTAGCCTCAGGACAG
R:
GTCGGTACCAGCAGACGAAAG
Band lengths:
256-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]